IMIS - Marine Onderzoeksgroepen | Compendium Coast and Sea

Thompson, Fabiano
ORCID ResearcherID

Publications (54)

A1 Publications (34) [show]
Gadelha, L.M.R.; Siracusa, P.C.; Dalcin, E.C.; Silva, L.A.E.; Augusto, D.A.; Krempser, E.; Affe, H.M.; Costa, R.L.; Mondelli, M.L.; Meirelles, P.M.; Thompson, F.; Chame, M.; Ziviani, A.; Siqueira, M.F. (2021). A survey of biodiversity informatics: concepts, practices, and challenges. Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery 11(1): e1394. https://dx.doi.org/10.1002/widm.1394, more Walter, J.M.; de Oliveira, L.S.; Tschoeke, D.A.; Meirelles, P.M.; Neves, M.H.C.B.; Batista, D.; Carvalho, A.P.; Dos Santos Costa, R.; Dobretsov, S.; Coutinho, R.; Swings, J.; Thompson, C.C.; Thompson, F.L. (2021). Metagenomic insights into ecosystem function in the microbial mats of a large hypersaline coastal lagoon system. Front. Mar. Sci. 8: 715335. https://dx.doi.org/10.3389/fmars.2021.715335, more Salazar, V.W.; Tschoeke, D.A.; Swings, J.; Cosenza, C.A.; Mattoso, M.; Thompson, C.C.; Thompson, F.L. (2020). A new genomic taxonomy system for the Synechococcus collective. Environ. Microbiol. 22(11): 4557-4570. https://hdl.handle.net/10.1111/1462-2920.15173, more Campeão, M.E.; Swings, J.; Silva, B.S.; Otsuki, K.; Thompson, F.L.; Thompson, C.C. (2019). “Candidatus Colwellia aromaticivorans” sp. nov., “Candidatus Halocyntiibacter alkanivorans” sp. nov., and “Candidatus Ulvibacter alkanivorans” sp. nov. genome sequences. Microbiology Resource Announcements 8(15): e00086-19. https://dx.doi.org/10.1128/MRA.00086-19, more Yamazaki, Y.; Sakai, Y.; Mino, S.; Suda, W.; Hattori, M.; Meirelles, P.M.; Thompson, F.L.; Sawabe, T. (2019). Repeated selective enrichment process of sediment microbiota occurred in sea cucumber guts. Environmental Microbiology Reports 11(6): 797-807. https://dx.doi.org/10.1111/1758-2229.12791, more Coutinho, F.H.; Silveira, C.B.; Gregoracci, G.B.; Thompson, C.; Edwards, R.A.; Brussaard, C.P.D.; Dutilh, B.E.; Thompson, F.L. (2017). Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature Comm. 8: 15955. https://dx.doi.org/10.1038/ncomms15955, more Walter, J.M.; Coutinho, F.H.; Dutilh, B.E.; Swings, J.; Thompson, F.L.; Thompson, C. (2017). Ecogenomics and taxonomy of Cyanobacteria phylum. Front. Microbiol. 8: 2132. https://dx.doi.org/10.3389/fmicb.2017.02132, more Calegario, G.; Pollier, J.; Arendt, P.; de Oliveira, L.S.; Thompson, C.; Soares, A.R.; Pereira, R.C.; Goossens, A.; Thompson, F.L. (2016). Cloning and functional characterization of cycloartenol synthase from the red seaweed Laurencia dendroidea. PLoS One 11(11): e0165954. https://dx.doi.org/10.1371/journal.pone.0165954, more Yamazaki, Y.; Meirelles, P.M.; Mino, S.; Suda, W.; Oshima, K.; Hattori, M.; Thompson, F.L.; Sakai, Y.; Sawabe, T.; Sawabe, T. (2016). Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps. NPG Scientific Reports 6(21631): 10 pp. http://dx.doi.org/10.1038/srep21631, more Meirelles, P.M.; Gadelha, L.M.R.; Francini-Filho, R.B.; de Moura, R.L.; Amado-Filho, G.M.; Bastos, A.C.; Paranhos, R.P.R.; Rezende, C.E.; Swings, J.; Siegle, E.; Asp Neto, N.E.; Leitão, S.N.; Coutinho, R.; Mattoso, M.; Salomon, P.S.; Valle, R.A.B.; Pereira, R.C.; Kruger, R.H.; Thompson, C.; Thompson, F.L. (2015). BaMBa: towards the integrated management of Brazilian marine environmental data. Database 2015: bav088. https://dx.doi.org/10.1093/database/bav088, more Chimetto, L.A.; Cleenwerck, I.; Alves Jr, N.; Silva, B.S.; Brocchi, M.; Willems, A.; De Vos, P.; Thompson, F.L. (2011). Vibrio communis sp. nov., isolated from the marine animals Mussismilia hispida, Phyllogorgia dilatata, Palythoa caribaeorum, Palythoa variabilis and Litopenaeus vannamei. Int. J. Syst. Evol. Microbiol. 61(2): 362-368. http://dx.doi.org/10.1099/ijs.0.019729-0, more Ast, J.C.; Cleenwerck, I.; Engelbeen, K.; Urbanczyk, H.; Thompson, F.L.; De Vos, P. (2007). Photobacterium kishitanii sp nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int. J. Syst. Evol. Microbiol. 57: 2073-2078. dx.doi.org/10.1099/ijs.0.65153-0, more Jordan, E.M.; Thompson, F.L.; Zhang, X.-H.; Li, Y.; Vancanneyt, M.; Kroppenstedt, R.M.; Priest, F.G.; Austin, B. (2007). Sneathiella chinensis gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China. Int. J. Syst. Evol. Microbiol. 57: 114-121. dx.doi.org/10.1099/ijs.0.64478-0, more Thompson, F.L.; Cleenwerck, I.; Swings, J.; Matsuyama, J.; Iida, T. (2007). Genomic diversity and homologous recombination in Vibrio parahaemolyticus as revealed by amplified fragment length polymorphism (AFLP) and multilocus sequence analysis (MLSA). Microbes and Environments 22(4): 373-379. dx.doi.org/10.1264/jsme2.22.373, more Austin, B.; Austin, D.; Sutherland, R.; Thompson, F.; Swings, J. (2005). Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ. Microbiol. 7(9): 1488-1495. dx.doi.org/10.1111/j.1462-2920.2005.00847.x, more Moens, T.; Paiva dos Santos, G.A.; Thompson, F.L.; Swings, J.; Fonséca-Genevois, V.; Vincx, M.; De Mesel, I.G. (2005). Do nematode mucus secretions affect bacterial growth? Aquat. Microb. Ecol. 40(1): 77-83. dx.doi.org/10.3354/ame040077, more Gullian, M.; Thompson, F.; Rodriguez, J. (2004). Selection of probiotic bacteria and study of their immunostimulatory effect in Penaeus vannamei. Aquaculture 233(1-4): 1-14. https://dx.doi.org/10.1016/j.aquaculture.2003.09.013, more Sawabe, T.; Hayashi, K.; Moriwaki, J.; Fukui, Y.; Thompson, F.L.; Swings, J.; Christen, R. (2004). Vibrio neonatus sp. nov. and Vibrio ezurae sp. nov. Isolated from the Gut of Japanese Abalones. Syst. Appl. Microbiol. 27(5): 527-534. https://dx.doi.org/10.1078/0723202041748154, more Sawabe, T.; Hayashi, K.; Moriwaki, J.; Thompson, F.L.; Swings, J.; Potin, P.; Christen, R.; Ezura, Y. (2004). Vibrio gallicus sp. nov., isolated from the gut of the French abalone Haliotis tuberculata. Int. J. Syst. Evol. Microbiol. 54: 843-846. dx.doi.org/10.1099/ijs.0.02804-0, more Thompson, F.L.; Iida, T.; Swings, J. (2004). Biodiversity of Vibrios. Microbiol. Mol. Biol. Rev. 68(3): 403-431. http://dx.doi.org/10.1128/MMBR.68.3.403-431.2004, more Ben-Haim, Y.; Thompson, F.L.; Thompson, C.C.; Cnockaert, M.; Hoste, B.; Swings, J.; Rosenberg, E. (2003). Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int. J. Syst. Evol. Microbiol. 53(1): 309-315. http://dx.doi.org/10.1099/ijs.0.02402-0, more Gomez-Gil, B.; Thompson, F.L.; Thompson, C.C.; Swings, J. (2003). Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis. Int. J. Syst. Evol. Microbiol. 53(1): 239-243. https://dx.doi.org/10.1099/ijs.0.02430-0, more Hayashi, K.; Moriwaki, J.; Sawabe, T.; Thompson, F.L.; Swings, J.; Gudkovs, N.; Christen, R.; Ezura, Y. (2003). Vibrio superstes sp. nov., isolated from the gut of Australian abalones Haliotis laevigata and Haliotis rubra. Int. J. Syst. Evol. Microbiol. 53: 1813-1817. dx.doi.org/10.1099/ijs.0.02625-0, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Swings, J. (2003). Reclassification of Vibrio hollisae as Grimontia hollisae gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 53(5): 1615-1617. http://dx.doi.org/10.1099/ijs.0.02660-0, more Thompson, F.L.; Thompson, C.C.; Swings, J. (2003). Vibrio tasmaniensis sp. nov., isolated from Atlantic salmon (Salmo salar L.). Syst. Appl. Microbiol. 26(1): 65-69. https://dx.doi.org/10.1078/072320203322337326, more Thompson, F.L.; Thompson, C.C.; Li, Y.; Gomez-Gil, B.; Vandenberghe, J.; Hoste, B.; Swings, J. (2003). Vibrio kanaloae sp. nov., Vibrio pomeroyi sp. nov. and Vibrio chagasii sp. nov., from sea water and marine animals. Int. J. Syst. Evol. Microbiol. 53(1): 753-759. https://dx.doi.org/10.1099/ijs.0.02490-0, more Thompson, F.L.; Thompson, C.C.; Hoste, B.; Vandemeulebroecke, K.; Gullian, M.; Swings, J. (2003). Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment. Int. J. Syst. Evol. Microbiol. 53(5): 1495-1501. https://dx.doi.org/10.1099/ijs.0.02658-0, more Thompson, F.L.; Li, Y.; Gomez-Gil, B.; Thompson, C.C.; Hoste, B.; Vandemeulebroecke, K.; Rupp, G.S.; Pereira, A.; De Bem, M.M.; Sorgeloos, P.; Swings, J. (2003). Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps). Int. J. Syst. Evol. Microbiol. 53: 245-252. dx.doi.org/10.1099/ijs.0.02447-0, more Vandenberghe, J.; Thompson, F.L.; Gomez-Gil, B.; Swings, J. (2003). Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems. Aquaculture 219(1-4): 9-20. https://dx.doi.org/10.1016/s0044-8486(02)00312-5, more Sawabe, T.; Thompson, F.L.; Heyrman, J.; Cnockaert, M.; Hayashi, K.; Tanaka, R.; Yoshimizu, M.; Hoste, B.; Swings, J.; Ezura, Y. (2002). Fluorescent amplified fragment length polymorphism and repetitive extragenic palindrome-PCR fingerprinting reveal host-specific genetic diversity of Vibrio halioticoli-like strains isolated from the gut of Japanese abalone. Appl. Environ. Microbiol. 68(8): 4140-4144. https://dx.doi.org/10.1128/AEM.68.8.4140-4144.2002, more Thompson, F.L.; Hoste, B.; Thompson, C.C.; Goris, J.; Gomez-Gil, B.; Huys, L.; de Vos, P.; Swings, J. (2002). Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae. Int. J. Syst. Evol. Microbiol. 52(6): 2015-2022. https://dx.doi.org/10.1099/00207713-52-6-2015, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Engelbeen, K.; Denis, R.; Swings, J. (2002). Vibrio trachuri Iwamoto et al. 1995 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981. Int. J. Syst. Evol. Microbiol. 52: 973-976. https://dx.doi.org/10.1099/00207713-52-3-973, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Swings, J. (2001). Genomic diversity amongst Vibrio isolates from different sources determined by fluorescent amplified fragment length polymorphism. Syst. Appl. Microbiol. 24(4): 520-538. https://dx.doi.org/10.1078/0723-2020-00067, more Thompson, F.L.; Hoste, B.; Thompson, C.C.; Huys, G.; Swings, J. (2001). The coral bleaching Vibrio shiloi Kushmaro et al. 2001 is a later synonym of Vibrio mediterranei Pujalte and Garay 1986. Syst. Appl. Microbiol. 24(4): 516-519. https://dx.doi.org/10.1078/0723-2020-00065, more
Peer reviewed publication [show]
Hirsch, S.; Acharya-Patel, N.; Amamoo, P.A.; Borrero-Pérez, G.H.; Cahyani, N.K.D.; Ginigini, J.G.M.; Hurley, K.K.C.; Lopes-Lima, M.; Lopez, M.L.; Mapholi, N.; Ouattara, K.N.; Pazmino, D.A.; Rii, Y.; Thompson, F.; Von Der Heyden, S.; Watsa, M.; Yepes-Narvaez, V.; Allan, E.A.; Kelly, R. (2024). Centering accessibility, increasing capacity, and fostering innovation in the development of international eDNA standards. Metabarcoding and Metagenomics 8: e126058. https://dx.doi.org/10.3897/mbmg.8.126058, more
Book chapters (18) [show]
Ben-Haim, Y.; Thompson, F.L.; Thompson, C.C.; Cnockaert, M.; Hoste, B.; Swings, J.; Rosenberg, E. (2003). Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 135-145, more Gomez-Gil, B.; Thompson, F.L.; Thompson, C.C.; Swings, J. (2003). Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 183-189, more Gomez-Gil, B.; Thompson, F.L.; Thompson, C.C.; Garcia-Gasca, A.; Roque, A.; Swings, J. (2003). Vibrio hispanicus sp nov., isolated from Artemia sp. and seawater in Spain, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 165-172, more Gomez-Gil, B.; Thompson, F.L.; Thompson, C.C.; Swings, J. (2003). Vibrio pacinii sp. nov., a new species isolated from cultured aquatic organisms, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 173-181, more Gomez-Gil, B.; Thompson, F.L.; Swings, J. (2003). Molecular identification of V. campbellii and V. harveyi isolates associated with disease in aquatic organisms, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 87-92, more Hayashi, K.; Moriwaki, J.; Sawabe, T.; Thompson, F.L.; Swings, J.; Gudkovs, N.; Christen, R.; Ezura, Y. (2003). Vibrio superstes sp. nov., isolated from the gut of Australian abalones Haliotis laevigata and Haliotis rubra, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 191-196, more Sawabe, T.; Hayashi, K.; Moriwaki, J.; Thompson, F.L.; Swings, J.; Potin, P.; Kloareg, B.; Christen, R.; Ezura, Y. (2003). Vibrio gallicus sp nov., isolated from the gut of French abalone Haliotis tuberculata, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 159-163, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Swings, J. (2003). Reclassification of V. hollisae as Grimontia hollisae gen. nov., comb. nov., in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 205-210, more Thompson, F.L.; Thompson, C.C.; Swings, J. (2003). Vibrio tasmaniensis sp. nov., isolated from Atlantic salmon (Salmo salar L.), in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 197-204, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Engelbeen, K.; Denis, R.; Swings, J. (2003). Vibrio trachuri Iwamoto et al. 1995 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 217-222, more Thompson, F.L.; Thompson, C.C.; Hoste, B.; Vandemeulebroecke, K.; Gullian, M.; Swings, J. (2003). Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 147-158, more Thompson, F.L.; Thompson, C.C.; Li, Y.; Gomez-Gil, B.; Vandenberghe, J.; Hoste, B.; Swings, J. (2003). Vibrio kanaloae sp. nov., Vibrio pomeroyi sp. nov. and Vibrio chagasii sp. nov., from sea water and marine animals, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 123-134, more Vandenberghe, J.; Thompson, F.L.; Gomez-Gil, B.; Swings, J. (2003). Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems, in: Thompson, F.L. Improved taxonomy of the family Vibrionaceae. pp. 39-50, more Sawabe, T.; Thompson, F.L.; Heyrman, J.; Cnockaert, M.; Hayashi, K.; Tanaka, R.; Yoshimizu, M.; Hoste, B.; Swings, J.; Ezura, Y. (2002). Fluorescent amplified fragment length polymorphism and repetitive extragenic palindrome-PCR fingerprinting reveal host-specific genetic diversity of Vibrio halioticoli-like strains isolated from the gut of Japanese abalone, in: Thompson, F.L. (2003). Improved taxonomy of the family Vibrionaceae. pp. 69-76, more Thompson, F.L.; Hoste, B.; Thompson, C.C.; Goris, J.; Gomez-Gil, B.; Huys, L.; de Vos, P.; Swings, J. (2002). Enterovibrio norvegicus gen. nov., sp. nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae, in: Thompson, F.L. (2003). Improved taxonomy of the family Vibrionaceae. pp. 95-107, more Thompson, F.L.; Hoste, B.; Vandemeulebroecke, K.; Swings, J. (2001). Genomic diversity amongst Vibrio isolates from different sources determined by fluorescent amplified fragment length polymorphism, in: Thompson, F.L. (2003). Improved taxonomy of the family Vibrionaceae. pp. 51-65, more Thompson, F.L.; Hoste, B.; Thompson, C.C.; Huys, G.; Swings, J. (2001). The coral bleaching Vibrio shiloi Kushmaro et al. 2001 is a later synonym of Vibrio mediterranei Pujalte and Garay 1986, in: Thompson, F.L. (2003). Improved taxonomy of the family Vibrionaceae. pp. 211-216, more Vandenberghe, J.; Thompson, F.L.; Swings, J. (2001). Phenotypic diversity amongst Vibrio isolates from marine aquaculture, in: Hendry, C.I. et al. (Ed.) Larvi 2001: 3rd fish and shellfish larviculture symposium Gent, Belgium, September 3-6, 2001. Special Publication European Aquaculture Society, 30: pp. 622-623, more
Thesis [show]
Thompson, F.L. (2003). Improved taxonomy of the family Vibrionaceae. PhD Thesis. Universiteit Gent: Gent. 270, tabs. pp., more